OrchidMD
OrchidMD is a multi-omics database that collects and shares genomic, transcriptomic, proteomic, metabolomic, and phenomic data of Orchidaceae plants online. Concurrently, a variety of analytical tools have been developed to mine these rich and valuable genetic information. As more sequencing data is released, the database will continue to be updated, further supporting in-depth research on the Orchidaceae family and angiosperms as a whole.
Omics Data
Genome
The complete genomes and annotated files of 22 orchid species are collected, and a quick download
Proteome
The proteome is the final product of genome expression and comprises 31,234 proteins from 10 orchid accessions.
Metabolome
The 20 metabolome were defined as the 6,114 of all small molecule (<1500 Da) metabolites found in orchid cell, organ or organism.
Phenotype
84 observable and measurable characteristics of 277 cymbidium sinense cultispecies (resources of a natural variation population) as a result of the...
Tools Kit
Gene Expression
Investigate gene expression patterns in diverse tissues, visualised in an "Electronic Fluorescent Pictograph" (eFP) expression data in orchid...
Transcription Factors
Orchidaceae transcription factors (TFs) are proteins that are involved in the process of converting, or transcribing, DNA into RNA.
Gene Co-Expression Networks
GCNs is an undirected graph, where each node corresponds to a gene, and a pair of nodes is connected with an edge if there is a significant...
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Blast
The Basic Local Alignment Search Tool (BLAST) finds regions of local similarity between sequences of orchid species.
Browse
Easy and quick to visualize the orchid species genomic data used in the web browser by JBrowser.
Primer Designer
This online tool designs PCR primers for the entered DNA sequence and chooses the optimum PCR primer pairs.
GO/KEGG
Visualize orchid species genes on any of the significant pathways are based on enrichment analysis of Gene Ontology (GO) and Kyoto Encyclopedia of...
